SquiDBase
A resource dedicated to revolutionizing pathogen detection and genomic research.
Our Mission: Solving Data Challenges in Nanopore Sequencing
In the rapidly evolving field of nanopore sequencing, researchers and developers face several significant challenges. At SquiDBase, we understand these complexities and are equipped to navigate them, enhancing both the science and its applications.
Voluminous Data
Raw nanopore data, or 'squiggles', are extremely large and complex, making them difficult to store and manage effectively.
Data Fragmentation
Squiggle data are scattered across various databases, complicating the process of aggregating specific subsets necessary for developing AI algorithms.
Resource Intensity
Managing the massive volume of squiggle data requires substantial computational resources and storage capacity, which can be cost-prohibitive.
Data Usability
The raw format of squiggle data often lacks structured metadata, which is crucial for enhancing their reusability and making them accessible for research and development.
Privacy Concerns
Ensuring the automated removal of human genetic information from squiggle data to maintain privacy and compliance with regulations.
Explore SquiDBase: Empowering Genomic Research
SquiDBase is an innovative platform designed to manage and share vast amounts of microbial paired squiggle-sequence data, enhancing the capabilities of researchers and scientists in pathogen detection and genomic analysis.
- User-Friendly Interface: Experience seamless navigation with our intuitive interface designed to facilitate easy data upload, download.
- Enhanced Data Handling: Support for raw POD5 file uploads along with structured metadata ensures enhanced reusability and management of your data.
- Accessible Submissions: Gain straightforward access to a vast number of submissions, making it easier to retrieve and utilize the data you need.
Join Our Global Research Community
We believe in the power of collaboration to drive scientific advancement. SquiDBase is not just a tool, but a community of forward-thinking researchers dedicated to groundbreaking genomic research.
Invitation to Contribute
Contribute your research, share your data, and access a wealth of resources that grows as our community does. By joining SquiDBase, you're not only accessing a dynamic database of microbial sequence data; you're also contributing to a global effort to enhance pathogen detection and genomic studies.
Benefits of Participation
As a member of SquiDBase, you'll gain unparalleled access to advanced tools, exclusive data sets, and the collective expertise of researchers from around the world. Participate in shaping the future of genomic research and make meaningful impacts in the field.
Our Team
Wim L. Cuypers
Lead Researcher
Halil Ceylan
Lead Developer
Eline Turcksin
Lab Technician
Julia M. Gauglitz
Promotor
Wout Bittremieux
Promotor
Kris Laukens
Promotor
Nicky de Vrij
Contributor
Tessa de Block
Contributor
Koen Vercauteren
Contributor
Kevin K. Ariën
Contributor
Philippe Selhorst
Contributor
Contact us
We'd love to talk about how we can help you.
Contribute Data
Enhance our resource by contributing your microbial squiggle-sequence data. Your contributions support global research efforts and innovation in pathogen detection.
Request Data
Need specific datasets for your research? Contact us to request access to unique squiggle-sequence data curated from our global community.
Ask Your Questions
Have questions about SquiDBase or how you can use it in your research? Don't hesitate to ask! We're here to help guide and provide the information you need.
Fill Out Our Survey
We have a couple of questions related to our squiDBase resources, which will be aimed at collecting and sharing Raw Nanopore data (or so called 'squiggles').
Go to Form